2018 ESA Annual Meeting (August 5 -- 10)

INS 2-3 - Automated assessment of the phenological state of herbarium specimens

Monday, August 6, 2018
244, New Orleans Ernest N. Morial Convention Center
Elizabeth R. Ellwood1, Hervé Goëau2, Alexis Joly3, Gil Nelson4, Katelin D. Pearson5, Pamela S. Soltis6, Patrick Sweeney7 and Pierre Bonnet2, (1)La Brea Tar Pits & Museum, Natural History Museum of Los Angeles County, (2)Cirad, Montpellier, France, (3)INRIA Sophia-Antipolis, Montpellier, France, (4)iDigBio, Florida State University, (5)Department of Biological Science, Florida State University, Tallahassee, FL, (6)Florida Museum of Natural History, University of Florida, Gainesville, FL, (7)Yale University
Like many biological traits, phenology is inherently variable. It is therefore imperative to have large datasets from which patterns of phenological shifts can be discerned. Recent experiments in computer vision and machine learning have begun to automate the process of determining the reproductive state of a plant specimen. In this method, a computer (or more precisely a convolutional neural network) is ‘pre-trained’ to recognize flowers, fruits, or other phenological trait, and can then code the specimen accordingly, e.g., full flower. This pioneering work shows promise for upscaling our ability to gather phenological information from millions of specimens.