2022 ESA Annual Meeting (August 14 - 19)

OOS 29 Changing the focus of eDNA – pushing beyond species presence/absence applications to unlock the trove of ecological information in environmental nucleic acids

1:30 PM-3:00 PM
520C
Organizer:
Louis Bernatchez
Co-Organizer:
Matthew C. Yates
Moderator:
Margaret F. Docker, PhD
After just over a decade from the first published study employing environmental DNA (eDNA) methods to detect macro-organisms (Ficetola et al. 2008), eDNA has revolutionized the science of species detection and is now broadly recognized as one of the most effective methods to determine the presence or absence of a species in aquatic environments. However, innovative research is demonstrating that eDNA (and potentially eRNA) could provide a trove of genetic and ecological information beyond species presence or absence data. Novel research on understanding the dynamics of environmental nucleic acids (e.g. its production, degradation, transport, and state) in nature are refining its application as a means to study or monitor population ecology, and novel research has highlighted eDNA as a potential source population genetic information. Similarly, emergent research on eRNA has illustrated its potential to allow researchers to push beyond species-level detections to infer the physiological state of progenitor organisms. In this symposium, we hear from researchers who are using eDNA and eRNA to study evolutionary or ecological questions beyond traditional species presence/absence applications. Our speakers will discuss effective ways by which eDNA can inform on the spatio-temporal dynamics of ecological communities, future prospects for monitoring organism abundance using eDNA, leveraging eDNA to obtain population genetic information, and pushing the resolution of detection beyond species-level applications using eRNA. Presentations in this symposium will explore opportunities to use eDNA and eRNA to study population and community ecology beyond species detection applications, while also identifying knowledge gaps and discussing potential limitations.
1:30 PM
The importance of species biology, ecology, and hydrology for the quantitative interpretation of eDNA-based data in lotic systems
Bettina Thalinger, University of Innsbruck;Dominik Kirschner, Eawag: Swiss Federal Institute of Aquatic Science and Technology;Yannick Pütz, University of Innsbruck;Elisabeth Wolf, University of Innsbruck;Christian Moritz, ARGE Limnologie GesmbH;Richard Schwarzenberger, ARGE Limnologie GesmbH;Josef Wanzenböck, University of Innsbruck;Thorsten Schwerte, University of Innsbruck;Michael Traugott, University of Innsbruck;Dirk Steinke, University of Guelph;
1:45 PM
Evaluating the effects of sampling design, sequence coverage, and bioinformatic filtering toward an optimal protocol for documenting freshwater fish communities in northern temperate lakes.
Erik Garcia-Machado, Université Laval;Eric Normandeau, Université Laval, Institut de Biologie Intégrative et des Systèmes (IBIS);Guillaume Côté, Ministère des Forêts, de la Faune et des Parcs;Isabeau Caza-Allard, Université Laval, Institut de Biologie Intégrative et des Systèmes (IBIS);Charles Babin, Université Laval, Institut de Biologie Intégrative et des Systèmes (IBIS);Louis Bernatchez, Laval University;
2:00 PM
Integrating physiology to improve environmental DNA (eDNA) as a means to monitor freshwater macro-organism abundance
Matthew C. Yates, University of Windsor;Alison M. Derry, PhD, Université du Québec à Montréal;Melania E. Cristescu, PhD, McGill University;Taylor Wilcox, U.S. Department of Agriculture;Mark Stoeckle, PhD, Rockefeller University;Daniel D. Heath, PhD, Department of Integrative Biology, Great Lakes Institute for Environmental Research, University of Windsor, Windsor, ON N9B 3P4, Canada;
2:15 PM
Beyond presence/absence: Analysis of environmental microsatellite DNA (emDNA) to infer population abundance - a case study in Atlantic salmon
Bryan D. Neff, Western University;Bryan D. Neff, Western University;Daniel D. Heath, PhD, Department of Integrative Biology, Great Lakes Institute for Environmental Research, University of Windsor, Windsor, ON N9B 3P4, Canada;Nabeelah Lulat, University of Windsor;Simone Miklosi, Western University;Shawn R. Garner, Western University;
2:30 PM
Environmental RNA applications for determining age structure in amphibian populations
Meghan Parsley, Washington State University;Caren S. Goldberg, Ph.D, Washington State university;
2:45 PM
Environmental transcriptomics under heat stress: can environmental RNA reveal changes in gene-expression across the trophic chain?
Robert M. Hechler, McGill University;Robert M. Hechler, McGill University;Matthew C. Yates, University of Windsor;Frederic J. J. Chain, University of Massachusetts Lowell;Melania E. Cristescu, PhD, McGill University;